Read data quality objectives from an external file
Arguments
- dqopth
character string of path to the data quality objectives file
- runchk
logical to run data checks with
checkASRdqo
Examples
dqopth <- system.file('extdata/ExampleDQO.xlsx', package = 'AquaSensR')
readASRdqo(dqopth)
#> Running checks on data quality objectives...
#> Checking column names... OK
#> Checking all columns present... OK
#> Checking at least one parameter is present... OK
#> Checking parameter format... OK
#> Checking Flag column... OK
#> Checking Rate of Change flags... OK
#> Checking columns for non-numeric values... OK
#>
#> All checks passed!
#> # A tibble: 14 × 9
#> Parameter Flag GrMin GrMax Spike FlatN FlatDelta RoCN RoCHours
#> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 Water Temp_C Suspect -0.5 28 1.5 60 0.01 6 25
#> 2 Water Temp_C Fail -1 30 2 100 0.01 NA NA
#> 3 DO_pctsat Suspect 0 100 10 30 0.01 6 25
#> 4 DO_pctsat Fail -1 120 25 60 0.01 NA NA
#> 5 DO_mg_l Suspect 2 16 2 30 0.01 6 25
#> 6 DO_mg_l Fail 1 18 4 60 0.01 NA NA
#> 7 Conductivity_uS_cm Suspect 20 1200 5 30 0.01 6 25
#> 8 Conductivity_uS_cm Fail 10 1500 10 60 0.01 NA NA
#> 9 TDS_mg_l Suspect 20 1200 50 30 0.01 6 25
#> 10 TDS_mg_l Fail 10 1500 100 60 0.01 NA NA
#> 11 Salinity_ppt Suspect 3 37 3 30 0.01 6 25
#> 12 Salinity_ppt Fail 2 41 5 60 0.01 NA NA
#> 13 pH_SU Suspect 4 11 5 30 0.01 6 25
#> 14 pH_SU Fail 3 12 10 60 0.01 NA NA